PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G342200.6
Common NameB456_007G342200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 1141aa    MW: 126875 Da    PI: 9.4019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G342200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-094479340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W++ E e++++a +++G++ Wk++a+ +  +R+++++
  Gorai.007G342200.6 44 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 79
                        6*****************99.*********.***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-44189IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-94187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-54480IPR009057Homeodomain-like
PfamPF002497.0E-84479IPR001005SANT/Myb domain
CDDcd001674.97E-64579No hitNo description
PfamPF065849.2E-31629729IPR033471DIRP domain
SMARTSM011352.1E-50629730IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1141 aa     Download sequence    Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKLTDK LGTQWSKAEI EQFYKAYREH  60
GKDWKKVAAA VHNRSAEMVE ALYSMNRAYL SLPDGTASVI GLIAMMTDHY NVLGVSDGER  120
ESNKPSDMSE KVQKRKRAKV HLESSKEDVV QPRSIASSEG CLSLLKRAGL NGILPHACRK  180
RTPRVPVSYS YRRDDTESFV PPIKRIKKSE VDDKDDEHVA ALTLTGTLQK GGSPCASRSP  240
YKITERRRSS PVRSYYRMLP QSETSKAELH DSSYECWMEG GPGGIELASG TYARDRGPLM  300
DMDGIGTVEV HRKGKNFYRK KIKVEESKNN LSDDGGEACS GTEGIVGNAL KGKVDMEISS  360
AKKKLSSCTE RKRTKKHVLG DQSCALDALL ALANLSSVVP TSITESESSV KLKEDRTTFE  420
VDDQSSVPEA ASITHHRDKI KQPRPNKKVL NLLNGAEDDS SRKSTVSEPK QQQEPSNNSR  480
KRKQKPYVSK ISSSEAPMDS RLRKHFDNEE MAKEEKKYLT KSKCASQQTS FRVPEGSVTN  540
NDPKMAGIDS VVSTSQVPAS DPVSLPTKHQ SRRKMNLKRA LLSTHKNSSV CTLKNQPNNH  600
SVPPDTPKEM LSSCLSSNLA RRWCCFEWFY SAIDYAWFAK REFVEYLNHV SLDHIPRLTR  660
VEWGVIRSSL GKPRRLSEHF LLEEREKLKQ YRESVRQHYT QLRVGTREGL ATDLAPPLCV  720
GQRVIAIHPK TREVHDGKVL TVDHDRCRVQ FDSPDLGVEF VMDIDCMPLN PLENMPETLK  780
KQNLAFNQFS LAPRGSQGNR HLELGGPEVF TSCGCVENAT SPVNINPIKV DAKRTLLHGK  840
PALPHVVSAH QAAYDQPLRI AHIQGREADI RAMSELSHAL DKKEALLSEL RNTNDIIENQ  900
NGESCLKVSE HFKKHITTAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS  960
SLISPEAGCV VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS  1020
DISMPAIKSP EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL  1080
LMIQRCTERQ FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI  1140
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478483SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9082289e-65DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434695.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X3
TrEMBLA0A0D2SPD40.0A0A0D2SPD4_G
STRINGGLYMA10G29481.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]